NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10000236

Scaffold Ga0209088_10000236


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10000236 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40158
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (84.51%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060589Metagenome132Y
F067363Metagenome125Y
F093219Metagenome / Metatranscriptome106Y
F096876Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000023638F067363N/AMKIKKFDQALHDKYDPPARKAVSDWIQMKWGLQAIDNPDIYGTDLIIYRNGNPVGSAEVEVRQWSPVCPFYTIHVPVRKVEMLEVPNTLFFALTHDMSHAYLIRGNEALKYNQVEMQDATKHEFYYDVPKHLFKYIDLTQPF
Ga0209088_1000023641F060589N/AMDEQKHKHRCAVRQLIMWRRIWGLKVFREYMHKHKLDWKLVRDFEDQWVKGNRADEKGEW
Ga0209088_1000023648F093219GGAMMNNKPVAWTACLSCGQKVTSDSIHTCSPQLKTLTDEEIEKVFVLNCNLINETFAYRDFARAILRKAQEK
Ga0209088_100002367F096876N/AMSDQIERIAVLEAEVEKLQASQKEILDCIHAVRDEMMRYKGFLGGVAFLASGIGIFLTLFKDWIFKHFA
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