NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10000257

Scaffold Ga0209088_10000257


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10000257 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38603
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004450Metagenome437Y
F011669Metagenome288Y
F014954Metagenome258Y
F018719Metagenome233Y
F033353Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000025731F018719N/AMTPTFNTWDRATLDKFALEAYLRLQQQQDQLEQLRGDLKDAIEAYRLRNLRD
Ga0209088_1000025739F011669AGGMNDNDDYELANWMHLIATCILALFAVTGIAGLAGFLWGML
Ga0209088_1000025740F004450GGAGGMNWVAAVLVALVMSAAYLLDGPSEHDARVDTAEEKIQRLCGENAGWKLLEDGSVQCYTHRGLKTRKVTL
Ga0209088_1000025750F033353GGAGGVRTEYHNDEFMITSEVMPTDDGRWRVQLRDDDSGQTVGPARFYDNQADALAYAEKLCS
Ga0209088_1000025752F014954GGAGMKTITLNRARYTVRDDRHSFLSDILKLTGKHKPIRPRGGDRRLYPTDGDVSTAAYVQEYYALNSNRKLFKNDAAPYGDANLAGFYENLSDRLTVPEGEDSLEVCDDVLA
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