NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10000285

Scaffold Ga0209088_10000285


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10000285 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36759
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (79.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004005Metagenome457Y
F006740Metagenome365Y
F031763Metagenome181Y
F053891Metagenome140Y
F090372Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000028521F004005AGGAMTTSAQSLAQYKENQMYGVNDINAYIASIKTSITYKLTGANMVVAGLMSDAQEEMAHGNNEGARKTLNRAKAVLFQIMDGSLVGTVERI
Ga0209088_1000028531F090372AGGAGMIDRLILSAVLGTVGWHGLNPEPPVPMTLQAKAKYKSVSAVCAKKKKTIKVKELCKKWEEHKT
Ga0209088_1000028532F031763AGGMQKMGGTQDMKPYGYVWTKDKHEPKFFWTEQPAREIQKNFGGEVVAVYK
Ga0209088_1000028535F053891GGAGMPRPKSELTKSGRAIGIRLTESEYQQWLKLGAAKWLRKLLQEKRDASV
Ga0209088_1000028536F006740AGGAGMPAFETWSHENLVKFAAEAYQKMQEQHDLIQQLQNDVKDAIKAYREVMK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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