 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027763 Open in IMG/M |
| Scaffold ID | Ga0209088_10000560 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25957 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (31.58%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008936 | Metagenome | 325 | Y |
| F025680 | Metagenome | 200 | N |
| F057894 | Metagenome | 135 | N |
| F059603 | Metagenome | 133 | N |
| F065376 | Metagenome | 127 | Y |
| F065768 | Metagenome | 127 | N |
| F070850 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209088_1000056019 | F059603 | GAG | MSTEEKIIKTMNEYYPIEGKIVDGCVTYHSTQRTHESFRLHLMNANPESIVYQYYLKRCGKWIKTLKLHNQKLIPIFVTNGTED |
| Ga0209088_1000056021 | F057894 | N/A | MAANRWRSGYMRLQDDTFTGYLTPIGQVQDVEVTFKLKAMQKIMEASEDLQVDAPNEYLIGALRDSEEGYKTADVIIYNKVVRLKLTEEDIKRSKTLSL |
| Ga0209088_1000056026 | F065768 | GAG | MSVCSPCYDAGSYVNACLTEFSFGTLPADDTEYIVWLQHNATKKIMQFTATTDAEGYIIIEGIQLDPLQGYTIWATLDGVQQDITVDGDIYTCLSFSAASVGQSPVVIP |
| Ga0209088_1000056028 | F025680 | N/A | MKYITGLKGRLRSLLGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGAEMELILGEMEKALGAGLSNPKNAALIGAYIHVIRERHDTVIHRDILLNIAATWIIRDDEDPNIVNSDIHNYKLELFEQLSKGGAKDFFSSLGIDPLMPLLTMSPEDFQILWEYNLVQQRNLKESLFRLNSHRESGRKKQATT |
| Ga0209088_1000056034 | F070850 | GGAG | MTEELSQTTQSITPSTGVVLLAFGKPQYYWAAFNLAFSIRKHSPNVNITVLFDDPIKGLSNCPDLMQYINNIGHIDADDIYTNKKLDPGKVKVNLYKYLPYDCNLYLDVDAIALKDIQPMIDELAQSGKDYISHCVGYHTIDKGRDFKEMQWAWADKLWAHFNLLESYVMPAINSSMQWIVKGSQAEAIYRTAKDLYFNHPMEVKDLRMKWGGGQPDELYMNVALAIHGIDPALKKYEKIQGSEGGMIHFSMQRGLNFQDIIDNYYLQSYYGGAGFTPIFYINWLDRMLNAEFKAIGKRHIYLISRIAQNKYADGKR |
| Ga0209088_1000056037 | F008936 | N/A | MASFDELVKRKIKLLETVPEDIATAAEKAQREAWRKIAPLLAEMDVDADGNIAQTENNIRRIGGITEELNKVLAGGEYKAAVQSFLASIDEGVQLTDDIAKKIDSTFQPDNVQKQLLAISKQNAINAFFGSGLRQNVTVPFLEQLTANVAARAPLREATKALQGVIEGTDANDGRLLANVRTTANTAQAIADRSYAAAVNEELGIDYFQYLGGEIPTTRPFCQHREGEIYHRKEIEAWGDGKNSAGINDIRNGTWDGRIDGTDSRSIFTFVGGWNCRHFLVPVIKQRVPASVIARAEAEGFATPPRPKGGAEALTA |
| Ga0209088_100005606 | F065376 | N/A | MNAANIENLSEFYKALNSTEVLRAQGMIAGAPQIIEDKLTYDMSAESIKAANDAIKHIETNRKMVTLPLDAFKKSIMDVERDATASLKAYIDHRKQMMIDYSNELERKKAEADAKIAQDAADALMSASSSDVSDIFATFTDATTTTTLEMDHTKNIRISKKAEIVGEVDWMTLLWTLMQAEMFDVQELLRKLPKAMELTKIDQIKGIELTEVKTQVIR |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |