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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027763 Open in IMG/M |
| Scaffold ID | Ga0209088_10001050 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18399 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (37.14%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009945 | Metagenome | 310 | Y |
| F011473 | Metagenome | 290 | Y |
| F016922 | Metagenome | 243 | Y |
| F057879 | Metagenome | 135 | Y |
| F093228 | Metagenome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209088_100010502 | F093228 | GAG | MEPVQLANAENAFEGGVLDKKWMFNVVGHLNLWHAGEVKLPSTEWGSGKILVSNTGWVVDLTRLKVPASSQVQSQREFQIVAAGANTVKIYNGTLFGQLPTGFSVGNSPIKTLTVANGDKIYAAITWDRRVLANGDIVSTITSRTIEAAATVPTNNTLTATRYYELATVTLGAGNIPVVAQSRWGPIDDLPGTAISNYYMNSSSTSLQTDYWDLLATGKGKQAGGTTDLAPTYDSIQVAGKGGWARFITSGTNLKIMARATTYNSLGQVTYIGQEYTVFDKPVVCETSVDVLIGLRLNGGYLEGQYRTIKVNAVSTPSPEWVNLITTTASVPDTCP |
| Ga0209088_1000105020 | F011473 | N/A | MNWKKYITDPSTKRPKRGAISRIAALLGVHYGNVRRMFDGIWTPTEQEAESLRAIVASRTNLAPKKRSDAGKKRGEYRKRAVAKSCAVPPQLKGLRSAGKTALK |
| Ga0209088_1000105025 | F016922 | N/A | MSNPIRLNSRAIQCRADSDGATEYAIRYAGQDFLVTAHSRLEADIAVEYYRPETADESQPDLLK |
| Ga0209088_1000105028 | F057879 | GGA | MTEPSTEPTNPRDTVRHEPVPAGGEAEKLSPFEDASQVPPWKL |
| Ga0209088_1000105031 | F009945 | GAG | MSTALAAFKRDNGVATHRKTGAGHRYPWMAFFATITMNDGTRRGFADVAAEYSMAALIGRNKVVDGADEESACRKLASLNGIPWPADEPKKRKAKP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |