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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027763 Open in IMG/M |
| Scaffold ID | Ga0209088_10001067 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18170 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (70.00%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000166 | Metagenome / Metatranscriptome | 1810 | Y |
| F001097 | Metagenome / Metatranscriptome | 780 | Y |
| F001538 | Metagenome / Metatranscriptome | 674 | Y |
| F002099 | Metagenome / Metatranscriptome | 593 | Y |
| F002487 | Metagenome / Metatranscriptome | 554 | Y |
| F007203 | Metagenome / Metatranscriptome | 356 | Y |
| F014143 | Metagenome / Metatranscriptome | 265 | Y |
| F056607 | Metagenome | 137 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209088_1000106710 | F000166 | AGG | MPNIPTPEHAELFAQSVRKWQQVLSLGDWRIEKGIKPAKAAMASVEFTPAARLAVYRLGDFGAEKITPESIDQTALHELLHVFLHDLMTVAQDPKSSQDEIEMQEHRVINLLEKLLSKDSYGKQ |
| Ga0209088_1000106718 | F002487 | N/A | MTKLTRQDAIKDLQGTYCCYCTEPKTYGSCCGENHFVPFEDLYEENKEAMIEEYLSEGNSNGT |
| Ga0209088_1000106719 | F014143 | GGAG | MNTHYLTHVRKMFRTYDAPPQVIRSYQKQWVKSVRQLGDKWLVAKPIERITND |
| Ga0209088_1000106726 | F001097 | GGA | MNHFQWPKNESSRIKPLQGLRSPRVVEAVQEKEIDDWLKQSVALVAGSVRGLGTNQRRVRYFGFEKPHDEVTK |
| Ga0209088_1000106737 | F007203 | GGA | MYVQMQGINLAPKVKELEKRIEMLENVVKELQSSSRPKLGRPPKDAHGNERLEVDTAS |
| Ga0209088_1000106739 | F056607 | AGG | MATAPVYYTDQLVKEYIDKNFAGKTGAELYNAVADEAAKQGVSAEQIGRVLGFDTAAVNKYATDIGKPLVAEQKALTDVIDYAYNTQFGRDPTAQEAKEAQAYLTGGGTNTNQQNSVRGTGILNQSLEGYNYDTQSIISGYRSTLGRNPTQTEYVSAMATLGYDPFNPTVLGEAGKLSANVAALESDPFAGRYANVNPYGTYDVATQTYKLDGTLPNISQTSQGNSVQFISPVTQRPITTSFVNGKLVVKDGVDTLTGEQAQSAINLALNTGALTATEYKNLTGALASAKSMDDVYKAFGTPQAVAALDPNYGFQLGVGKTLAQAQANSVGVQALVDQAAAANGGRLPANFSVANLAKTANVPFQFGQPTYNKAFTTDTGKTITTLAKSPTVMYNPANPNAPFNFNPANVYQEPVTAGQFRELFPSFGESKRLAQGIINERPSTQSIVNMIQGANVSPTYRPPPTIAAPTGLMDAWKAAETSGNYGDVANMLKGVSVNDLRNYGASPADIQYITSRPEIAGLFPTGTTASTTATPSLNNVLSMIGR |
| Ga0209088_100010675 | F002099 | N/A | VRWLVALVLTLSLQSTGKDLCSVREFYGIAYTVHNPTERHQQMSAWLTKHKTLCKSSDMTVIWNNLSEWAGSADSAELRHKIVIAYKDALEREKK |
| Ga0209088_100010676 | F001538 | GGA | MIDTIKLFPTVQPSGYPDRHDLAQVKLEKQHEVNKANELAKQKKTQLQDIGFEIYTKKVVQERLRMEIFQNRKLDIYV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |