NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10001071

Scaffold Ga0209088_10001071


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10001071 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18136
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (87.88%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017130Metagenome / Metatranscriptome242Y
F034923Metagenome173N

Sequences

Protein IDFamilyRBSSequence
Ga0209088_100010712F017130GAGGMGYAEFHTADGWVNVEDVPIIDTVNCQLCNEPTLASDITITARIEQGVVVAGTWSCNKCRAVNG
Ga0209088_1000107128F017130GGAGMGTSESEGIMGYAEFHTADGWVNVEDVPMIDTVNCQLCNEPTLASDITITARIEAGVVVAGTWSCNKCRAVNG
Ga0209088_1000107131F034923GGCGGMSNNDKLLIICLIGAGISSIVWILQSYKQAYDRGHRDGWHKGRAVNRADFWQE
Ga0209088_100010715F034923AGGMTNNEKLLIICLIGAGISFIVMAVSAYKEAYDRGHRDGWHKGRAVNRADFWQE
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