NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10001359

Scaffold Ga0209088_10001359


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10001359 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15828
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F002826Metagenome / Metatranscriptome527Y
F037193Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000135921F002009AGGAGGMTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSMPCPDNNGETSVDHLERALVRSLFVLAQIKKEVPRL
Ga0209088_100013596F037193AGGAGGMKTKDELAMQVKKEWDEKGWRWKLSLSAGGFTSEIYCYGTAEGEYFNCVRELVSHAYQMQSV
Ga0209088_100013597F002826GGAMEVEAKKRLRWARDMLAIARGKLVVERNRASHGHAIDMIQIITMVDAASLVCKEVVGGDDENKG
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