Scaffold Ga0209088_10003005

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209088_10003005

Scaffold Ga0209088_10003005

Overview

Basic Information
Taxon OID	3300027763 Open in IMG/M
Scaffold ID	Ga0209088_10003005 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10050
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (70.83%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038244	Metagenome	166	Y
F054028	Metagenome	140	Y
F077222	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000300513	F054028	AGGAGG	MKLVATTETVKIQWFAIMHDGSKIRNNKGFIHNAWDVKCSCGWESKTGGAIKACVARIADQHKWDAHDYSWKAGN
Ga0209088_1000300514	F077222	AGGA	VKILWIVLTVLAAVGKGRRVMPWAILAYFGGWVALGVVCLTRQRPLRPVPPWMLNLGYQSQAKRAFARIDTPKDLLG
Ga0209088_100030054	F038244	AGGAG	MPISSSQTSVTTSPTLLVAGDAQAEEVHFHSSSGIIYLGDSNVTSSTGYRMDNGDKAVFANHENAIYGITSTGTATMSVLVITK

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