NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10003498

Scaffold Ga0209088_10003498


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10003498 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9300
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (59.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009461Metagenome / Metatranscriptome317Y
F029438Metagenome188N
F037699Metagenome / Metatranscriptome167Y
F045748Metagenome152Y
F066709Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000349812F029438AGGAMANTRKRKKINRRVVRRSPEPLSKLDVFMITKHEIYKAAKKAGFSNEVAWFFMQENNALPDWVSNDKPDALIPRIDPTDDEDE
Ga0209088_1000349814F037699AGGGGGMNSKTLAAINSYARSAFVCLATVYVTNPSGSFDDIWKAFLVAFAAPLLRALSPSDTAFGRGSKE
Ga0209088_100034984F045748N/AMLFHEKAGFDAGEEHVVVMCVKCHNTGVKARIEAITDKAVVRCTKCGAWKMESGNCYTLCKKTNALSV
Ga0209088_100034985F066709N/AMANKSDWDLDLRFGQEGEVAANALLTAPIETVEVKRDRRWKDTGNLYIETDCWSDVRQEWYWSGITVTKATHWSFVLEDILITVPTDKIKLAVKTYGIFKEMNRPEYSTKGYLITVDNLCRVAFV
Ga0209088_100034989F009461N/AMKINGLTVLWFMIATGLIAYALQLLKRESYNSGYWRGRAIGWESHRRLTNIQKKSDEVFDYEKN
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