Scaffold Ga0209088_10012802

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209088_10012802

Scaffold Ga0209088_10012802

Overview

Basic Information
Taxon OID	3300027763 Open in IMG/M
Scaffold ID	Ga0209088_10012802 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4478
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020167	Metagenome	225	Y
F040536	Metagenome	161	N
F055552	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_100128023	F040536	AGGA	MDELGKVIRFHPVKSPLSLFYEVIEPDGETRWGGERVFDALSWLHLAPKGSRLLVSGWESDDLDAQPVGQPLDVTEMYQLLKGVN
Ga0209088_100128026	F055552	AGAAGG	MNKEYWQRKADLCQKIGIEQLMAGDIKNGTRNLKRMVRAMEEVNLIKANEGEDKSAADMWASLIASGVMLAGEGESK
Ga0209088_100128028	F020167	GGAGG	METINQLVNEIYEDNYSHIELDDAMGGDCDCHVHTTLKTIVKYWHEREGE

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