NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10016636

Scaffold Ga0209088_10016636


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10016636 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3865
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002826Metagenome / Metatranscriptome527Y
F004010Metagenome / Metatranscriptome457Y
F019469Metagenome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_100166361F019469N/AIMATRGYEQITFVDSDILIANDCDDIGDGVNMFCAFDEGAFLDRKYEMGKLASAFGAQIDPRFYVNTGVFVISSKAVGVLSMPPLGLLPNHFAEQTWMNIMVHLWNVPVQELDPAYNCMTSVESHFGLDRYKDAYCIHYAGQSGDMPKLIEQIKSDDAKLVELGR
Ga0209088_100166367F004010AGGAGMLGKDVSKNMHELAMDNKKKGKARGAGGTPRSRKQMIAIALSAAGKSNKSPRKFRMQSGM
Ga0209088_100166368F002826GGAMEVEAKDRLKWACDILLSARGKLAVERDRANHGHAIDIIQIIALVDAAALVCKEIAEDK
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