NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10022470

Scaffold Ga0209088_10022470


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10022470 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3245
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014486Metagenome / Metatranscriptome262Y
F024954Metagenome / Metatranscriptome203N
F086551Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209088_100224703F014486N/AMNIEKLLKENLESFYPWSENDNPPLDTNKSFVQKQREIDEVFEGWRASM
Ga0209088_100224707F024954N/AMKEQMKNIIESLEVGKYYQIENHIAICEMLNSTSNKKCLSRISGVGSVLAFYDEVTEVEMTPELLKQCEERKNGTMNFIGSFNASSKYKGD
Ga0209088_100224708F086551N/ANYTYNKIRKERKNKMNIQINPELYENKNICRYGHEKLLVKIFPSTIGWKTKTATAEILEGEDKGKWTTIYMRKGLYPVDAQ
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