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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027763 Open in IMG/M |
| Scaffold ID | Ga0209088_10023886 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3134 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F001915 | Metagenome / Metatranscriptome | 617 | Y |
| F006264 | Metagenome / Metatranscriptome | 377 | Y |
| F027490 | Metagenome / Metatranscriptome | 194 | Y |
| F098944 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209088_100238861 | F006264 | N/A | MEDPSTIFQSKLSSQAEVCARKTLEWLQKDLQGSQKLEPDEVYYLAYAATILLTIRDSYG |
| Ga0209088_100238862 | F001059 | AGGA | MVTYDIASLKEDLPTAKELAQFVYDKVNVSLDLVGKPKQEQYEVAKNALEGKKVPSEYLTDSNPYVEKKDTIPEDPLRKMPKRSIDLPDEDAQVHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITYQITGPVEKIAVGEKLNKYGQTVPEKYTWLDPRTEERILRNPDGTFTKEGRGVHTFLIGEKGGGIWTLIDRDIVSISAKNIADPWA |
| Ga0209088_100238864 | F027490 | GAG | MSYGKVINGGAQMRKGVSKGINDKLSSRSAEDERREVVATAVNNAYKVNTISSQHTNDTKGGAFTKPSNRSKDYGV |
| Ga0209088_100238867 | F098944 | AGG | MFNEIRPEGSMVSSEAIRQKARDYAKAKRAEKKAMKLATGKIDPKNAIKINEVVDDFDADAFHPRSQNPKPNLGGRPKSVVNKVTEYGALFNKLNDERTAKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEEALNEFLDSLRKV |
| Ga0209088_100238868 | F001915 | AGGA | MEWTLAHPLHDVDDIVDMADSVFGTEADGILTRDKAVFRKNVTIATTVQLFDKSREFIAVCRKEDALLGYCWFDRGGYTTYANEEISNAKFHHVDLTLSPRLRMKLINEMIDQHLLWAHTWHIPVVCSTSIRAEHNGFMRIHQKRGFTVNGSYAWIRTEKGMECLTK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |