NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10025414

Scaffold Ga0209088_10025414


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10025414 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3019
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027756Metagenome / Metatranscriptome193N
F030670Metagenome / Metatranscriptome184Y
F032548Metagenome / Metatranscriptome179Y
F036564Metagenome / Metatranscriptome169N
F078229Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1002541410F027756GGAGMKLKDLIDRKILFINFPINRHAIQEGKVSEISPAEKCIKINNDWHLINNIRIIELFSKDERPSLGFN
Ga0209088_1002541411F032548N/AMNYNKEMDKAIKILEELVIQADEDCPQDCRTMHFVNALEEASEFIMEHKNAK
Ga0209088_1002541412F036564GGAGMKLGRISLDLNYIVDMDNEDMVRHATEALYEDLMQGIKYGDLANWIRISEDKDAKEDMIPEFLLEEQND
Ga0209088_100254145F078229N/AMNKIKYTYYVEQDKDKDGNYVQSFSIYKVPVVKTIRLKTFKKLKDANNFLDTYESN
Ga0209088_100254146F030670N/AMKVIRYIKQLEDEFGNDLELWGAYEETRRDNYPNVDFIDAKLLKTFPSPYHARNWMEYDGKRTY
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