NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10031700

Scaffold Ga0209088_10031700


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10031700 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2662
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029418Metagenome188Y
F031359Metagenome182Y
F080877Metagenome114Y
F100665Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_100317001F100665AGGAGMAKPYIKVVSIKDTNKGDCKLTLDMNQAGREVILQAGIQKALSDYMVANTKKLSFWNKLQICWGIL
Ga0209088_100317007F029418AGTAGGMTPDEKKQKFEQDIIEIAVAEYYEYVDVNKRTRSEKDAKMFYDAMRLGVIRGINFATNQYMQSLKNFEEAKKDE
Ga0209088_100317008F031359GGAGMVTTEKKQKQIIVEQVIVTGYVKHANGRKSPFSYNKNDFEPKHLEGIFDGVGRIYQ
Ga0209088_100317009F080877AGGMDELERDLDPPSPQEPIRIKSWWLSVKWEDGRIEDIALPPEFRQAGKDIENFLDEVEYEYNRDILEHQAQKYGDPDGDY
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