Scaffold Ga0209088_10380952

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209088_10380952

Scaffold Ga0209088_10380952

Overview

Basic Information
Taxon OID	3300027763 Open in IMG/M
Scaffold ID	Ga0209088_10380952 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	549
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003407	Metagenome / Metatranscriptome	488	Y
F026823	Metagenome	196	N
F065769	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_103809521	F065769	N/A	TLICFLEYCPAEKGSTDSYGAPYEPDLEESMTLNNAYITGTDVDIAHMILQGLVDHIEVTALEKYNER
Ga0209088_103809522	F003407	N/A	MNDKDLPPAINACLDLVKDLLHPEVFGHSVPNEVKTRAFVVKTMLERLKVRMDKQT
Ga0209088_103809523	F026823	GGA	MTRGLKPRVGPAIEAALQKKSNLSDLDLAKICFCARRSAARELFDLHCNELVYISGYTRV

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