Scaffold Ga0209134_10004384

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209134_10004384

Scaffold Ga0209134_10004384

Overview

Basic Information
Taxon OID	3300027764 Open in IMG/M
Scaffold ID	Ga0209134_10004384 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4116
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011223	Metagenome	293	Y
F014133	Metagenome	265	Y
F104718	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209134_100043841	F014133	GAG	MNHLKNVWEWLTNHWVMPTPAELIAEELIQAQRTKLRHQSSMEYHTALVAYNVARIKRLKALTTKTEVVE
Ga0209134_100043842	F011223	GGAG	MSKIRIQLVEDEEETPTVFERFWDNLMTFAKCVGAFAAICLAIGYFSSTKAQSKQCEPTKTVLTKSIFK
Ga0209134_100043844	F104718	GAG	MQKEIDAIVAMMAPPPSSTGLLTARDVQDIVRRAASKGALVGWLAAERDVHARMSRTISQLEYENQCNKDRVKELELEIIGLQQ

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