NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209134_10006027

Scaffold Ga0209134_10006027


Overview

Basic Information
Taxon OID3300027764 Open in IMG/M
Scaffold IDGa0209134_10006027 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3572
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006623Metagenome / Metatranscriptome368Y
F007170Metagenome / Metatranscriptome356N
F024556Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0209134_100060271F024556N/AVFGDGVRTSEAHDLSELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGTNANSLKVGK
Ga0209134_100060272F006623AGGTGGMNLQNYRLEPNPNVPGDWIVFGDIYDNDGNLLGTFGPDGTSVFGWWVTQDADFQQSYSTQFSIVMAQEIVNGTAE
Ga0209134_100060276F007170GGTGGMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMGVYNTIAPQTDAISRKQPITPYIVFDRAGNAGQDQDVLCGSRVFTYPTYRITVWDTASGAVSMNQSAAIMSRVDTLLDNIHVSSTTPRFYSRRESTAQ
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