NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209134_10038538

Scaffold Ga0209134_10038538


Overview

Basic Information
Taxon OID3300027764 Open in IMG/M
Scaffold IDGa0209134_10038538 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1565
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009671Metagenome314N
F064512Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0209134_100385381F009671AGGAMVRSRSRKDVPEVQVPKRHATQWEIQSNAVLVELERKKNQHYDKWGVDRLITLVDIEFRAKFWVQMSRVWDAVDLGDIDRLHKAVNGMCKGFDALETWAAENEIEPNPAIQFLEWKSVKGVPMVIVRTENEAVDLQRQRKDINNKNIWTLEEIEVFLQEPQVQEIIKLKALVPTARITKFTPKEGFGKGSGFDDMEDDLDFIFSGEPYEPKYKPV
Ga0209134_100385382F064512N/AMARPPTTTTVQFRRKLTDADRTILLCAGKGNISNGFKNVLDCYAILWELGYRPKVDLRDFLGVDKDDQ
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