NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209073_10242430

Scaffold Ga0209073_10242430


Overview

Basic Information
Taxon OID3300027765 Open in IMG/M
Scaffold IDGa0209073_10242430 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.8834Long. (o)-83.4195Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014601Metagenome / Metatranscriptome261Y
F025249Metagenome202Y
F028763Metagenome190N

Sequences

Protein IDFamilyRBSSequence
Ga0209073_102424301F025249GGAGMKSLGSRFNILSAEIRDSSIGSNPRNPPPSVFGIIVVGLLAGLVIGLLAGPNFTLQGFFLGFAGGALITAGLYFYSAERSRPAK
Ga0209073_102424302F028763AGGAGMSEPTRSKRRIVLGIFAIIMGCISLVGLSSTSYYFGLGIFGGAYGAVMIALGVALITKKEVVV
Ga0209073_102424303F014601GAGGMNSSKSESQRPSPIPRAVLAGLIAGIAAGLISYIAINSIVGLIIGFIAGAIVGSRTVLMMDRAREQDQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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