Scaffold Ga0209770

Basic Information
Taxon OID	3300027769 Open in IMG/M
Scaffold ID	Ga0209770_10000002 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027769 Open in IMG/M

Scaffold ID

Ga0209770_10000002 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	276166
Total Scaffold Genes	225 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (12.44%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

276166

Total Scaffold Genes

225 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (12.44%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013274	Metagenome	272	Y
F013864	Metagenome / Metatranscriptome	267	Y
F015065	Metagenome / Metatranscriptome	257	Y
F018500	Metagenome / Metatranscriptome	234	Y
F031001	Metagenome / Metatranscriptome	183	Y
F031383	Metagenome / Metatranscriptome	182	Y
F032631	Metagenome	179	Y
F034077	Metagenome / Metatranscriptome	175	Y
F037076	Metagenome / Metatranscriptome	168	Y
F038994	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_10000002117	F015065	N/A	MSSTTQFKAICTQNDMRLGKNIEMKLFTLEYNYNNANFDIVSLINANIHKLLYEVNKDIIEAIEIYPNPSDSSEQNILYKFLDIGGDLGGLKTYMYVNTKIAKRYASNSNTEIIFTSKSIPFEHHSELIRQKYKLLEYPLYIQKYIYDEHKNNGVISNIQVLHMFKLKPDQETELTVAMENAIGILIKKMYFRLKVAIESLR
Ga0209770_10000002148	F031383	N/A	MEILSKLPFDLQEYILVKVMKRYKLRDGKYVKQIDKTKYKFLDYIMRPSVNKNSYNYHEDIYEDIFNSNEDKERFYYKFYIKNLHDIPIRKVSHVDDDMIDVRIEHQNNTYYYEVSIYRLKLKNDTNSTSNKILKDIYYKGSLADNYFWDFLEFSYTVK
Ga0209770_10000002149	F013274	N/A	MESIAGPNDLVPSFKIFSMLIIITIIIKIIFQYSYNENAAPSFSDVNSLTDVSLIKDEIKKKDASTLKKEITVYFKSYIFYYLTLLWTVCLMITIVSITINKYNPDKPGCMMRMSLLNVVPITLFMLLLGWIIYQNTIYYKKINSGYVAETYVTFDIAVNVLLLAQAGIMYAYINQQMLCSSEMGQYSEAMSKYGPYIAGFIALLAGGCMVLNEIILRFFTTDG
Ga0209770_10000002197	F013864	N/A	MNAILPSTNQDNTDTLAKYVVLGIFLILALVAIQYIFRNQIGMIEGLANRNSKKGGLDTDPLEDENDGDIITIAKRQEELTAKTQKSLNMDSHYNHYNKIIENMDEWVNAKIVNSLKNVSREVHGEGKMEDIIRHMNELNTMNKFKLTLEECARYIDTK
Ga0209770_10000002201	F034077	N/A	MVNSKVARRVLFNSTGPTNAIMTDTRHGGGDKKGGAIPAGTGQMRSFAMRNTIVEPAKNKAFMFRFTERLNPARHSGPKL
Ga0209770_10000002202	F038994	N/A	MTRKTVAMKSSLTSKGCHFGSMPGSAPKIGRGSWTSTAYRQNGLTCDCLGKIRFDTCAAQYQYLKDKNLIFNCKLTGGVGRQLFTKNCAPAKA
Ga0209770_10000002213	F031001	N/A	MEGYNGQPQQQEQRGLIGQVSDEMQKELDTMMDVLEEIQGQIPEGAYLRGMNALGALHKHKRTALAARRPGDILRCWQTLDEILEEDEDLYDEIMEVADDIVMELCGEEATIYADSNHNLVHRGEEKEIFDMLVNYKPEEGNAGYETSPMVLHHAIQVIMARIFDDTHHELEIVRPVSCQCGWRGAQGNWDRHITNARHQRWVNAERERTSQKRLAEARETIVARRDSGIVYLNEMHCTPETQIVTAEAIREAEAAGDRVVFMCADGTMSWFC
Ga0209770_1000000223	F032631	N/A	MFGEDGGSWYDNIFLIDILIFVFSFAFLAIAGIIMYFCYPLVMTAFQT
Ga0209770_100000027	F018500	N/A	MNINFNITKYTGVMAFYAVLTYLLFPAIAYFLFGKTLEAAGNGFIAGSVVSVVLWWMVGMGMVKGA
Ga0209770_1000000271	F037076	N/A	MRNNKINMITLDVRISCDTFWNYNFNIPIRIDDYYNPNDRNINLNIRNDDRHRSNTCEIGNIGRSDPLFLRLEEYLVDYVIQFIYDDLVQKRQNRDIPILLKKARKFHIHGRTLEDLLFPSNSTNEHVLPENIVYICTHC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209770_10000002

Overview

Ecosystem & Geography

Associated Families

Sequences