Scaffold Ga0209770

Basic Information
Taxon OID	3300027769 Open in IMG/M
Scaffold ID	Ga0209770_10000093 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027769 Open in IMG/M

Scaffold ID

Ga0209770_10000093 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	52124
Total Scaffold Genes	73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	63 (86.30%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

52124

Total Scaffold Genes

73 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

63 (86.30%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005346	Metagenome / Metatranscriptome	403	Y
F006344	Metagenome	375	Y
F008879	Metagenome / Metatranscriptome	326	Y
F010158	Metagenome	307	Y
F014007	Metagenome / Metatranscriptome	266	Y
F015312	Metagenome / Metatranscriptome	255	Y
F042225	Metagenome / Metatranscriptome	158	Y
F085641	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000009313	F015312	GAGG	MKDMGKIKPNTDSTGENGYPEKDVNKGVTHMDMRGAGAATKGKKFVSQINLKNNGKVRAGWS
Ga0209770_1000009314	F042225	AGGAG	MAMTLKEHAKLPANKAHGKNAKGFRAGGKTNSEMKKYGRNMAKVMNQRSPVRKSSGPR
Ga0209770_1000009334	F005346	AGGAG	MAYSNALEYLTAKLDEERTLIVEALIQGKLDEGEYKRLCGALQGLELAKNHIKDLAKRLERDDE
Ga0209770_1000009338	F014007	N/A	MQDLLIPEIDENIPLPANAAEALPDLTPEAEIEMRARSIKLIADMTGTPLCPDENDISAAREIATAHLANPKTRVDYSKYPNETMAYLAGLVAQGNCMLVDDLSELKLYVVNKLVYEVEHADSSKTRISALAKLGEVDGIDAFKKRSETTHIIKPIEEVEKELMSVLEGIEYKVLEDGKEVVSGSDG
Ga0209770_1000009342	F085641	GAGG	MTDNLLNKPNHIVSLATSCVLVSVESHVWNATVQDKQISDEVTTAKKASTDSGKFVKNLLAKNAEHKAVLNYRQTIYNWVQRCTYDWAGSQRLLPIANLTKFHTEFREHELRFNELVDEFLDKYPAIVSNMAFVQGDMFDRSEYPDVTELAHKFSVDLFQYEVPTGDFRCAIAQDLIDDMATHYNRQAKRMVESILSKQTEQLLDIMKSISYCCEVETTVDSNGEVKVRRRKLYDSTLDRARELCDTFKEFNLVADPKLEEARAGLSKLLEGVEIEKLRNSDTQRVVIKEGIDDILSKFGVSV
Ga0209770_1000009358	F006344	AGGAG	VEIEDDILDLIRALPNEINDTSTTTEMKFLTVGSVLWQCHHEIKYLRSEIARLKDDKRRKKRKEVYRVQT
Ga0209770_1000009368	F010158	GAG	MTIKVVEPEWIFPFEGMAVGDSFFIPTLKIPEMLYVIDCRAKVAQVRVKAYASSKEGHLGIRVWRTA
Ga0209770_100000939	F008879	AGGAG	MAKFKKGDAVKVQAVNPQGPVLALRMDEEGVIYCLVEWTDIEGKIQQRWFAEDELTGV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209770_10000093

Overview

Ecosystem & Geography

Associated Families

Sequences