NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10000249

Scaffold Ga0209770_10000249


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10000249 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31848
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (17.58%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005879Metagenome / Metatranscriptome387Y
F009073Metagenome / Metatranscriptome323Y
F009333Metagenome / Metatranscriptome319Y
F010084Metagenome308Y
F010836Metagenome / Metatranscriptome298Y
F027843Metagenome193Y
F047046Metagenome / Metatranscriptome150Y
F058148Metagenome / Metatranscriptome135Y
F070108Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0209770_1000024941F009073N/AMKNYQILLTAIGSFFVGISILNGTAQQYVYFAGELNELGCAVISLTMGTLCIFGLDWKGLFSYLNN
Ga0209770_1000024945F058148N/AMKLLDVSGMSVNEYCNFVESTALYTGVSVFDLNMEYCFEIGLISNEMYERAKAELLERRRYS
Ga0209770_1000024966F010084N/ALDITEEVIKHLTNSVKTKIGVSSIDGVGVFAIRDIKEYEEVFPIWNYESGIYLIPNDRLDEIPNEVVDLLDKYFINDECGYKVIRLFKGFNFTFHGFSYCNSAWPDTNRVNITNDGIAMRDIKSGEEILEWYDKNIKT
Ga0209770_1000024968F009333N/AMNIVRFNRHEVFTSEMMDYHSTTLRMVEDYHMNRNESWFTSLYNMLCGVWDGYLYTEMLETAKQMGLPTHITNRIQFTESFINK
Ga0209770_1000024969F047046N/AMNIINVIAPSQQSVDLKSVIGKEVSENHSPTCRGKLIKVNKTTCTFEVVKSPYRSGDESRVGERYLVPISWAWNAFFF
Ga0209770_1000024972F005879N/AMFNEQIFWKDGFEGECRGGIFTRAVDLKKFLELVEANENGNGGEVVGLRFDDNNLEIIIKPKN
Ga0209770_1000024975F070108N/AMVFSLEEQMDIELILAEASAWGLSFEVEQTAKQFLIEGCTPVEAYEQAYNEWIK
Ga0209770_1000024977F027843N/AMQIKMINANGSVWVVKREFKAESWFVQGLFANKFTAEEACEAYHVEKLLRDSNNTHFLVNEVPEAQIVID
Ga0209770_1000024980F010836N/AMATSNFHNVNATHIFACSLENEWDYEDLVDNLKSELNNDPDYVDYGKTDYNELRSFPSRSLGSLRRYIQYKDFYVEVCVTAVIRSGYYSGCNLDWNVDYLINGDASYDSPDFYIDDIAHYGNLPKSKATIYAKLAEKKAEKVKDSIVEKLEKIYSDYSDKLGVTAQFSNGETIYHAIA
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