NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10002518

Scaffold Ga0209770_10002518


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10002518 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9115
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004154Metagenome / Metatranscriptome450Y
F013636Metagenome / Metatranscriptome269Y
F095483Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209770_100025182F004154N/AMWNKVKYYALRYWVSVSFILLAIYFYQPSQSITHCSPNILLTDIEPKTILGLGEMSWMWILMAVAHSANTCYCDIKSLLKKK
Ga0209770_100025183F095483N/AMKKFLQWWKIAGQLWGFVFVIGVSSGLLIGFMDEIRVNDWLSLGWLVLFFGSASWYAWQMKVHGWVLPKNIKDTH
Ga0209770_100025188F013636GGTGGMINPNVKWQKYLNGSNRAINKYLSNYGNPLIEQTFQRLKLAIKSKKSHIILFRFKDSDIVSKINRKDYILALEKLLNLCTKLEKYEMCREIHNELKIHKLKEARGIKPKARVTLT
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