NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10039761

Scaffold Ga0209770_10039761


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10039761 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2024
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002406Metagenome562Y
F006182Metagenome379Y
F019834Metagenome227N
F105155Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209770_100397611F019834GAGGMKELKFTITGTIFVPDDIEYEYDFENQIYSFKINDKTYSLIAGLEADEKEIIVTDENFKSHNITHVEYEDAYFED
Ga0209770_100397612F002406GAGMEDLKWILAMSERLRDTLTNEYDDKTKDLIIRAFAFGLFKNNTLLEELKSSSLIESDYFEDEE
Ga0209770_100397615F105155N/ALKSSVAKKLAAEIKYLEWDLITFNFYHKSYKGYNFYKRIISLNYWQYTVADDITHCTFRVYEKEAKNAKLDDERTHLHFSDK
Ga0209770_100397616F006182GAGGLKINFRVTGTMEVPDDAIKHYDVAGELYALEFNDIMYMLQVCIVAEAGAGGFDILHQFEEMDNHNIKNLHYDDVNFIEE
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