NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10048811

Scaffold Ga0209770_10048811


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10048811 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1801
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043895Metagenome155Y
F093769Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209770_100488112F043895N/AMKTLTLSLMIFTVETTLIALNQDFDAKLRAISQIESNDNDKAKGRHGEISRYQLKRAVWKQHFPSEKDSRHIPAEARRCAKAHLCWLELRLCLAKQTKDPNPRDVYAAWNLGLEAFSRRDYNFDRLPPSIKQRADRFANLYAELRNSQ
Ga0209770_100488113F093769N/AMSNQSLNELDLLLGLPKPVEEMTDKELERFLLKHFPHTRPSGTDLASLLNDPLLKGIDVQAIINQTQNFKFKK
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