NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10112759

Scaffold Ga0209770_10112759


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10112759 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1113
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004978Metagenome / Metatranscriptome416Y
F010760Metagenome / Metatranscriptome299Y
F064710Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209770_101127592F064710AGGAGMQEAISTKEKLTSLMLQMQYIIQDDYEDNEDIQNAFNALASAFDYYIEE
Ga0209770_101127593F010760AGGAGMLDISKVVKVYNGRIGCMCGCNGKYSYTADGAENYSPGYDVSDKVNERSVRMITKKVLADPRVQFEGDYAFVEDRARNKMQMVVFKMEKV
Ga0209770_101127594F004978GGAGMITADTLEVLTTYSPQYLTKAAQLAGYKGPNFTSCKFLGITNGGQFAYLAVYQVKDGTDSTKVFLTYDHAEDRVFADVQLTELS
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