Scaffold Ga0209086

Basic Information
Taxon OID	3300027770 Open in IMG/M
Scaffold ID	Ga0209086_10000021 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027770 Open in IMG/M

Scaffold ID

Ga0209086_10000021 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	156442
Total Scaffold Genes	203 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	175 (86.21%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

156442

Total Scaffold Genes

203 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

175 (86.21%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004477	Metagenome / Metatranscriptome	436	Y
F047683	Metagenome	149	N
F067749	Metagenome	125	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_10000021141	F004477	N/A	MSLMSFFSSPPITSFEQLELEKGKIQLTIMKMVTLVLSSIMLAVVGIFLIGLFLPNEMIDNNEIFKIIGPAFSMIIGAFVGAFATMMGMKVAEFDPNVKTQELGKTDHKVLAEAHVINAQAESIETENEIKMMAAIDKYKDSDEDFGPF
Ga0209086_10000021199	F067749	GGA	MKPIVYVPDVPNLECGSNGQISFRQMEDYFVGIAKITSQLKLQAKFIQDDCGKELLGAVLNMEKLVDDITGILMTDVFKKIKSREQEMKYKVREFLKEIDVFFQKKIVEALLKIVDILGIPNPLEIPIPFITAVTLLDEAGNPISYQPVVKDFFTKEGKVKIKAAMAEDIESIRAFFGDGKYDGTFGIKSPEHEAEEFWQKALAWMKELLSDFIGACINAIIGLLTKLPPPLGTLIKQLGVFIDPTKPIKEQLKLKYEDFKKRIKKAKEDVLSGKAEKDLGEELLQELIDFVLNLPIPLFGTLGNLIGFDNEQRKKKETIHSKEELWHRIEDAFEEAMEKIKRFFQTDFIAKIHDIILKAPGWILQQFPIVGKILDTIKLIIDICRGKVSICMVLNIILKPIFGIPDLILKLIPDCIEVRRTKYGLEPNPDTLPKWAQPTSVTV
Ga0209086_1000002177	F047683	N/A	MPNYGRMILSVEKEYIMTLTIKQIESNYAVPADATRQNYYPVRAYWIPIELREQVLAAYRETNTRVRLRYRGPRAVSIGREMTRPDKTTYLRSRHRAMQDCLIADATHFTVYDYTSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209086_10000021

Overview

Ecosystem & Geography

Associated Families

Sequences