Scaffold Ga0209086

Basic Information
Taxon OID	3300027770 Open in IMG/M
Scaffold ID	Ga0209086_10000043 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027770 Open in IMG/M

Scaffold ID

Ga0209086_10000043 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	110973
Total Scaffold Genes	179 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	124 (69.27%)
Novel Protein Genes	14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Associated Families	14

Scaffold Components

Scaffold Length (bps)

110973

Total Scaffold Genes

179 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

124 (69.27%)

Novel Protein Genes

14 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000671	Metagenome / Metatranscriptome	945	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001280	Metagenome / Metatranscriptome	732	Y
F001562	Metagenome / Metatranscriptome	670	Y
F008305	Metagenome / Metatranscriptome	335	Y
F009143	Metagenome / Metatranscriptome	322	Y
F014144	Metagenome / Metatranscriptome	265	Y
F014250	Metagenome / Metatranscriptome	264	Y
F024549	Metagenome / Metatranscriptome	205	Y
F038205	Metagenome / Metatranscriptome	166	Y
F038246	Metagenome	166	Y
F047650	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000004310	F000376	AGGA	MSMYQEKAKECICCGKHVPLPIVLKDYNGIKVCPTTYYNIKEYSRIWTSIGSRPTGGIRKHFSEYVQSLVEIEKSNESV
Ga0209086_10000043101	F038205	AGGA	VGNILEILAVSCDECGGAGFVFWGDENNYDVESCDCALEMWGI
Ga0209086_10000043102	F024549	N/A	MYRLDTYYDGELEYTHKFADALQAFEAFAKCYDVGFAKEFATYNLSLPTGKMYTKNFNRIGLVSQK
Ga0209086_10000043120	F047650	AGG	MAEDVSPVYYCDSCSVARASYLIKLLDGELAFCTHHYNKSKKALDEKAYEVVELNKTEESPKLKEMAE
Ga0209086_10000043122	F000868	AGGA	MSFLENENQMVIDAEYSYIGEQLVEDWTNSNLDEGQLFADFRFAEMCESNYLKGRFNQFYDLKPEDQYYVEWDEEA
Ga0209086_10000043123	F008305	GAGG	MLGYTYKDIQAFGNSLTWAIDTAKSQGEEQQYKQLLIVWDFFEGLLAEGYIDENTYYG
Ga0209086_10000043125	F014250	GGAGG	MSYKDTLLEPRLQKLVDLGESGTDILHGELKNLMLEAETQLDYATKAEEESEEAMDSMERRYWEGQLEALTECYILTYNLTFAINERIISRG
Ga0209086_10000043135	F038246	N/A	MVTMGILDNFEIFLEKTEETEKCHYCQSKAKYSDIAKVDEKKYDVVGVCECHSFKGLSS
Ga0209086_10000043152	F001280	AGTAGG	MCIECGCESVGSETGIVPAPVIDVSRDGESGLNLSMTSTPEQTRQFINGK
Ga0209086_10000043167	F000671	N/A	MEKILCYSCNKSKNNLVIRKSALLTINLFICETCIDSKFEPRWVIILSGRQNGLDHIKEYILKKRYIGKEIAATEVIV
Ga0209086_1000004332	F014144	AGGCGG	VEKSKVVTCDICNKDVEVRWGIFANETLNRHKKAEHK
Ga0209086_1000004351	F000258	GGAGG	MTANYKLDAILEIRKFLWSKLVAAEIFDENEYFSDSINDKIVPIIPVQQVSEMDQFLSGKKHIVYDKIGTSYEENWMVCCEQVLFTIYSPDVSEINEIRNFMIDEFRRVDESARDVNRFASLSNKFKFFSIFVADISPTEPSEEMQGLMSSDVILEVKYARMVDRVGRFL
Ga0209086_1000004395	F009143	AGGTGG	MMTKWDTIQADVSDAYAYLDEEEAYNKALEEGLVIGSTEYDEDELSKSLTLDWEAYE
Ga0209086_1000004397	F001562	AGAAG	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYSTFTASEILFNCDPIAYQMGLVEHEDYLAEMENE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209086_10000043

Overview

Ecosystem & Geography

Associated Families

Sequences