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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027770 Open in IMG/M |
| Scaffold ID | Ga0209086_10001048 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22779 |
| Total Scaffold Genes | 55 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (76.36%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F000450 | Metagenome / Metatranscriptome | 1126 | Y |
| F002489 | Metagenome / Metatranscriptome | 554 | Y |
| F010085 | Metagenome / Metatranscriptome | 308 | Y |
| F038669 | Metagenome / Metatranscriptome | 165 | Y |
| F071228 | Metagenome / Metatranscriptome | 122 | N |
| F084217 | Metagenome / Metatranscriptome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209086_1000104814 | F038669 | AGG | MNNILEPHLQKLVDLGESGTDIMHGHMKNLMYECETKLLDTSQFVGQLQDNPEYKYLSGRMDTLTEIYIMTYNLAFAINERTVSRG |
| Ga0209086_1000104819 | F000450 | AGGCGG | MGDRANFGFVQPNGNTIVLYGHWAGHNMLGKLADAVIKARPRWNDGSYATRIAISQMVADEWNMETGWGLYINEIGDNEHKIAIVDFKQQTFSLHEEAPHNDLDNKVRGMNNDAIFTMDLSVFCEKYAMENILVV |
| Ga0209086_1000104823 | F071228 | AGGA | MLDNLETSMSVPHEYNSNLLVTYKKIAGTYAAPEAPEYITQKVVDLEWALEQGRRADDLYNGLKLKVNELEELLVELYNPNYTKEEALQQIAELFGFELSKTVTVTGTIAFEVTVQVPLDEIDNFDAHYKLGDELSLTSYGSEVEVNDWSIEDTNVDWD |
| Ga0209086_1000104837 | F000447 | AGG | MGYIEIFRLDEQGAGWVDLSEATPDELLNLEIGLFNEGAL |
| Ga0209086_1000104844 | F084217 | AGGA | MNDYLNYLDEVYDDLVSEYGEGITLAYHVANEKEM |
| Ga0209086_1000104851 | F002489 | GGAG | MSETPVNQNLEDNLPMVDYIMLHRIYDLLTLIANEVAGSEKTSKMVEYHEQGYLLGPAPSYTPEGE |
| Ga0209086_1000104852 | F010085 | AGGAG | LRQIQYVSQYIALSEESLVPKLECPMDQGSLFCNLDLEDNIFLYCISCDYKNFIGSSFYDNIVLLVDGVKNV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |