NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209086_10008385

Scaffold Ga0209086_10008385


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10008385 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7145
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001915Metagenome / Metatranscriptome617Y
F105153Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209086_100083851F001915AGGAMEWTLAHPLHDVDDIVDMADSVFGHEADGILTRDKNVFRKNVTVATTVQLFDRSKEFIAVCRGPKVIDTFLGQAEVNDALLAYCWFDRGGYTTYANEEISNAKFHHVDLQLSPRLRVRLINEMIDQHILWADRWGIPVVCSTSIRAEHDGFMKIHKKRGFTVHGSYAWLRTEKGMECLKK
Ga0209086_100083856F105153N/AMKITHQAKALAEQTSGAYSYDRFKNWEAVIQALLNLGYTEMETEAIVRSKWARWACDHDTNFGGRYGYHTSTAMVRFMKGTPQSEINDLVFETFGFSE
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