Scaffold Ga0209086

Basic Information
Taxon OID	3300027770 Open in IMG/M
Scaffold ID	Ga0209086_10009226 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027770 Open in IMG/M

Scaffold ID

Ga0209086_10009226 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6772
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6772

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (54.55%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001731	Metagenome	644	Y
F002433	Metagenome / Metatranscriptome	559	Y
F003182	Metagenome / Metatranscriptome	502	Y
F010982	Metagenome	296	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000922610	F010982	GGA	MVRLSREDEIIAHTAGLARESYYGSNPKFLGNKGNFHNAVVIHSEAVGAEMAVARYFGVEDFVPTVNTFKNEPDVYWNGIAIEVKQTPHKRGHLIISEDDRDTDIAVLVVGESPSYYVMGWIPVGVAKRPRFQSAQGGYWVSQINLQPIETLRKSIHANT
Ga0209086_1000922611	F003182	AGGA	MPILEFDCSICAKLYGKAKQRHGIRKTSELTLHEWFSTCLGCGAMGIKVVDDDKVAGLSL
Ga0209086_100092262	F001731	AGG	MTVFNPVWRVTIGGVQYQTAILSNLTITSGRTNIYEQAQAGYTNIELINLDQSNVIIGINDSLTIELQDSTATFVPIFGGSIVDIAISVAELGNVAYAQRVKIIALGALARLPKALTDGVLAQDFDGNQILTILQDLLLNNWSEVPAALQWNTYDPTETWANAQNIGLGEIDTPGSYELAQRASSRTDIYSLVSALATSGLGYIYEDAQGLISYASADHRSIYLATNGYVNLSANDAQGSGLTIQQRAGDVRNTITLKYGTNSTSEVDATDATSVGLYGQLAQIFTTTVKHQADAQDQADFYLTLRAYPQYNFNQITYQLTNPEIDDGDRDSLINVFMGMPLAIADLPLNMSAGTYLGFVEGWTFQAAYNQISVSLNLSPLSYSLQAMQWQDVSVVEAWNTISGILDWENALVVA
Ga0209086_100092266	F002433	N/A	MSVGEWTAVGGLVLAVLTAIYSSMRFMVKSIMRELQPNGGKSLKDQVSRIEQRLDTLILEMALKK
Ga0209086_100092269	F000403	N/A	MRPCCDFDCGGYSMSGPIEIINPRTMTCTLMEDGVVIATYKVEQCDKCSRLVKFDDFGYQKGFGNEKIIWFCWDCR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209086_10009226

Overview

Ecosystem & Geography

Associated Families

Sequences