NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209086_10013842

Scaffold Ga0209086_10013842


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10013842 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5316
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001731Metagenome644Y
F021937Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0209086_100138421F021937N/ALCEALWTAATSAPNTGLPVVLVADTGASFAFTVQPILPSAGGTAPDAQTVSLAFTCVTTPVLTIS
Ga0209086_100138425F001731GGTGGMTVFNPVWRVTIDGVEYQTAILSNLTITSGRTNIYEQAQAGYTNIELINLDQSNVIIGINDSLTIELQDSTATFIPIFGGSVVDVAISVAELGSVAYAQRVKIIALGALARLPKSLTDGTLVQDFDGNQILHILQDLLLNNWAEVPAALQWNTYDPTEIWANAQNVGLGEIDTPGNYELAQRSSSRTDIYSLVSALATSGLGYIYENAQGQISYADSTHRSIYLATNGYVNLSANDAQGSGLTIQQRAGDVRNTITLKYGTNSTSEVDATDATSVGLYGQLAQIFTTTVKHQADAQDQADFYLTLRAYPQYNFNQITYQLTNPEIDDGDRDSLINVFMGMPVAIADLPLNMSAGTYLGFVEGWTFQAAYNEISVSLNLSPLSYSLQAMQWQDVSVAEAWNTISGILDWENALVVA
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