NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209086_10046712

Scaffold Ga0209086_10046712


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10046712 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2458
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001725Metagenome / Metatranscriptome645Y

Sequences

Protein IDFamilyRBSSequence
Ga0209086_100467123F001725GAGMAAISNGTTCIYGIANGTFGNLFVQSYSLSSSFNSEATVVDETGLTKTHRLDDRKSELTVEGIAKTSVVPILGAALSFTLNTASAYPSGSASVSFSGTITKIDDKGQNKGFTSVSITAIDYEGISV
Ga0209086_100467124F001055N/AMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDSAVTQTLPKAVVLCEAARAPSDLPEGEGNFSCSVRITLFSNADDTTLADHRLRCAALSGNMRDLTSIKAAFTATGDASCYDVTMQSEDEGIDERSWATAFSFDLLAVFPA
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