Scaffold Ga0209086_10092920

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209086_10092920

Scaffold Ga0209086_10092920

Overview

Basic Information
Taxon OID	3300027770 Open in IMG/M
Scaffold ID	Ga0209086_10092920 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1561
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F088868	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_100929201	F088868	N/A	PVAPVYRHGDCSWLPALALKAGWQPDQIGKLTQIALRESGCCIRRGGETVDKDCKITGHDGSNHLSDTSILQINGLNFDIKRNPTAIICLQMKICTQEQLLDPYTNLKAGKVLFDYWQKAAGDGWIPWDMCNRTKTCK
Ga0209086_100929202	F013413	GAG	MTENEYDETFDMRMEKEHQLNLDRMRQFRLIGEQISKMPDTPPKVLEIEVRYLMGIISELETRIKDLESEVRRLENWISRG
Ga0209086_100929203	F014620	GGA	VDNQLQMFAPTIGLGGTYERPAINRDIVIIAREAKQTSVDAAIKAKPKTGKKRQRVHAYLLGRPATDEEIETALNMSGNTVRPTRGSLVKDGHVIDSGVRRLTRAGNEAIVWRCV

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