NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209086_10157278

Scaffold Ga0209086_10157278


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10157278 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1091
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003640Metagenome / Metatranscriptome475Y
F039998Metagenome162Y
F075679Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0209086_101572781F075679GAGGVQVIYLTHFRTASTTDYELFDDVVFPQKVHWFPDTYTRAKSGLFYVPHRLAEKVLDSKLLSYLRGNPVGKTAFILAGGNAHFAGIGPRHYDNRLSYVYKFMPFSLTQVFAGRTAQACGSIDMVTTDASACASSLKVMMDVQNLI
Ga0209086_101572783F003640AGGMALALVYDPRYHDFDSWASLMCEAYAGQSLEMPNGEDNWKGWAAGIKGIDIFANESIPAPYIYENWQDWAQALVGAVNQPTERAAT
Ga0209086_101572784F039998N/AEKVDLKEQRRELRVRIRSNVSGGDYQLGKMLLDAETGDVRG
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