NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209810_1000291

Scaffold Ga0209810_1000291


Overview

Basic Information
Taxon OID3300027773 Open in IMG/M
Scaffold IDGa0209810_1000291 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)129569
Total Scaffold Genes143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (55.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002755Metagenome / Metatranscriptome532Y
F002992Metagenome / Metatranscriptome515Y
F049050Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0209810_1000291134F002992GAGGLYGAAVSLRTSPAIEHAALPSGGSITVWVGVPDDAYIDDKSQLTTVDIQLHEGNAVVASVSTVLDPDQDSEGRQLAREVKGALESGEIGLNAHDLEPFADRRR
Ga0209810_100029169F002755AGGAGMPPRRVVTGVLLAAGSLAGSLLVRRRAARQQARVDLYAADGSMRSFTEGTPEAERLLPIARDLLAA
Ga0209810_100029192F049050GGTGGVSVADAIIDEARALVAAGGSPDWKELRDRIRALGGDQRDALRRLERIGAVHRARAAVAPARPAPAARVASRRPLLKTRPTVTGNMDVRRGEGTALAWTREPKVAAWEARISERPDPRSDYEVRETAELPADATSLELPLGDTPLRVHLLGRDRGGRLVRRAIVSGLTRETWAERWQRRASAS
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