NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209810_1000394

Scaffold Ga0209810_1000394


Overview

Basic Information
Taxon OID3300027773 Open in IMG/M
Scaffold IDGa0209810_1000394 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)100485
Total Scaffold Genes107 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (57.94%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001384Metagenome / Metatranscriptome709Y

Sequences

Protein IDFamilyRBSSequence
Ga0209810_100039489F001384AGGAGGMPNLAGVGTPITYSDDNPISNWIEALRKERDKIKREPKDDAERKLLARWLSYRGRDELEVIVGAGCYAYSHFAGELDSEWRLLLADHIRTEAGHGWGYIQQAQALDPSRDHTQPDPEFVLEHGLMPRTEHWQLQTRDFLSYLIAGNNWPYGHCTAATIQSIKITTPKVLDFEERVVHAEERGHHDAALQKIHDYVWSLVDRYGLDYVKKRIADIDATALNSRSRAVFDPPRREFLRKYFDVPLDNVTKFFEWRRYLYLNVLGWEPEPVEIKNWPSEVPVPKAA
Ga0209810_100039490F001384N/AMADLRGVGTPITYSEDNPVGEWMERLRKERDKIKREPRSDEERRLLGRWLGYRGRDELESIVGSACYAYSHFAGELDAEWRLLLSDHIRTEAGHGWGYIKQGDAVDPSIDHSRPDPDFTLEYGVYPRRDHWDIMTRDFLSYLIAGNLWPYGHCTALTIQSICITTPKVLDFEDRVVHAEERGHHDAALQKLHDYVWSLIERYGEEPIKKRIAEIDAAALNAGSRICFDPPRRDFLRKYYDVPLENASKFFEWRRYLYLNVLGWEPEQVTIRDWPKEIPVPDQIAA
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