Basic Information | |
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Taxon OID | 3300027773 Open in IMG/M |
Scaffold ID | Ga0209810_1000930 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 51179 |
Total Scaffold Genes | 54 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (72.22%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012524 | Metagenome / Metatranscriptome | 280 | Y |
F017527 | Metagenome / Metatranscriptome | 240 | Y |
F041385 | Metagenome / Metatranscriptome | 160 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209810_100093011 | F012524 | N/A | MDVTADYRADTADEASSPVRSDKIARLLGEIEALIADDEAADRQITGAWQTFGDILAAAHVHTWDAYSVDLTTDAESYRQLSRRQQDAVKRVFGTIYRAESVVDDWMDRIVAALPARPEYEAMRAALMTQEHDERMHRGSLLRVATEVLGVEAADADRVARKYNNFVAEILFDRFEDEMRQLLRPNRPLEDVYTAIFIYGVISEDVVANSDVVIRRGKGRGLYDAYDLPGMKEGQTNVRRDEGRHVRIAVLATHRYLDEFEGAAERLLGISSDYMDLADRMVRRAKASRGLIDAHLAESYGPDVDSLYYYVMNMKRLAVRLDELGLREGVVEVKQRVDDAIAELSGEDGEPIVETPGRLLRLVGPRMLKLAGASRLAG |
Ga0209810_100093015 | F017527 | AGGAG | MAAVRRGAWVALRYVTTLFFIGVIVQFFLVGYGLFAMKHGATIDNAKSLDAHRGLGFILTDFGSALMLILVLLAWPARGLLGRWILLVVLAFVQSILATEGFKHWGIGMFHPVNALLLLGLSGHLARYAWMSRKRDEAVTPVAAPSG |
Ga0209810_10009302 | F041385 | AGGAGG | VRRTVLFGLVLFGASVAVAAASSGGLPNIGHAKMTAQPVYRGYYDHHVDTYLITDVSSKSQATAMHINYSAELKSVKGLPDQYFVVGKAAPGQLTIFGSEPGESDYNPLWEVVWVTWKKGAKPVLLGQDDQIKSLAKKGKLTMKDAHIVLDAPILHVGKGG |
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