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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027773 Open in IMG/M |
| Scaffold ID | Ga0209810_1001803 Open in IMG/M |
| Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29538 |
| Total Scaffold Genes | 36 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (91.67%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Pennsylvania, Centralia | |||||||
| Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007854 | Metagenome / Metatranscriptome | 343 | Y |
| F012361 | Metagenome / Metatranscriptome | 281 | Y |
| F013999 | Metagenome / Metatranscriptome | 266 | Y |
| F016649 | Metagenome / Metatranscriptome | 245 | Y |
| F036795 | Metagenome | 169 | Y |
| F085449 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209810_100180310 | F007854 | GGAG | MNTLIANQYGRVQGEAGGCGLTLCVTVQTPRRESVELQTRVDSIEQQLHFLAILRAVERRIEQFQLRDGKAGESTDQQSPFDETVCGEEDLFRSNGSPSKNKIYGRFSQFLVYEQVDQGRLRVFFAVRDEAKRVARFDLHPGEVQAMHSLARRALFSCEQIGLLLRDELSVSVTLSASRHGLRFGVQTPLWRSEFVISKANDLATLAVFTRRAINQEKTIPIKFGGEANQLTLRRRNDGQVLAEFEHDGAMERIALSTLQLYELEILAQYALHRAFEPSSFAAGNPLPPETATAA |
| Ga0209810_100180314 | F036795 | GGAGG | MKFVWIGALLLIFASVANLISNRQSGRLIEESWTPASHVLPETRLRELKRSTPAYAAQIFARLPEPIREKFAAKIRRALELMIFRSLLLWHITPALLIAVIAGSLEGRWARANQKALVKMHSPMRFSLALTGLGFMPIQALLWITAPVAVPPTLLVFTVGAVVVISTRNLVVHAPTRF |
| Ga0209810_10018032 | F012361 | AGGAGG | MSNDGNSFTHYVIANEAILGEACVIEKCNAWISLAFIKLGIGRPDAVADRAFVENRALVPKTAN |
| Ga0209810_100180324 | F013999 | AGGAGG | MFGTIRRKWRIESRRFVRAVGTGAATLLLASPAFAQIGGDRVSSFLSNALSYAQGLGIFGAGFLVIWAVANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG |
| Ga0209810_100180332 | F085449 | GGA | MASGAAPSSFRLNSVDRHGRQIDPAVLAAAETVFARALEYGTNLLGDTAVVTNALEEIAATVSQLIARRDPPGAPEPIRNLPGYIFRAFVREVNRLKNKELAVLDAAIAGHTLAQRLADPARQLEMRLLVDECLAEFNFVERDMCWRRLEGFTWDEIGPVHGLSGHAAEVRFRNAVRAVKAKLARSRKPLPPGAQTAQNEQLMPAMEADDDKRKT |
| Ga0209810_100180333 | F016649 | GGGGG | MCNRPLSFFLIALAFAIFSLSGCVSRQDISGAWKGTIQASAAGGKGNWQGPAELTLNQNGDALTGTLVFTHPQAGRVQVPITSGVVSKNAVTFSGQSQFPLGGSIEVTFHGTVSGTSLSGTTDMTSRGLFGTVTNSGPLNLAKQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |