NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209810_1025433

Scaffold Ga0209810_1025433


Overview

Basic Information
Taxon OID3300027773 Open in IMG/M
Scaffold IDGa0209810_1025433 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3685
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007233Metagenome / Metatranscriptome355Y
F017625Metagenome / Metatranscriptome239Y
F090756Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209810_102543311F017625N/AMSKNKPQEFNEEEFFGFAKSYLSEAFPNPQRIDCPPDSDLQRMAEHPVSERDDEVSKHLIGCSPCFKRYMEILAELKRRKAG
Ga0209810_10254332F007233GGAGMATRNQKRHRRKSNQDIFTDGIKGKVLKAVSISNELECRYISLEFEDKTELRISLDTRLTGKLELFDGKTGDQELVRRVGLIPDDTPLWRPAERWR
Ga0209810_10254333F090756GGAGVAGKRKPKYLSAHQGCPGGPKCRHCTWDGMYISVDGPHSKYMKGRRGQYRGDIDGAIDDFLTTLKRDARYLLRECAKITPVLSQFHLDFS
Ga0209810_10254337F017625GGAGGLPKARKVAFNEEQFFGFAKSYLSEAFPNPSRIDCPPDSDLQRMAEHPISERDDQSSKHLTRCSPCFNRYMEILAELKSRKAG
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