Basic Information | |
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Taxon OID | 3300027777 Open in IMG/M |
Scaffold ID | Ga0209829_10000889 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 25700 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (23.53%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F038058 | Metagenome | 166 | Y |
F039455 | Metagenome | 163 | Y |
F091224 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209829_1000088911 | F039455 | AGG | MAKVHCNLGRYGDVCAFLPVLKNEFDETGEKSRLIISRDYADILEGVSYVDPIVYQGKFEDISGALKFAKGIELDVVTSQVVGIPDVVVSQVYGDAHAPKIICDSFQQDAWRLAGKLELWPKQPKLVFDKRDKKREAKLFKGIPKDKPWIVVSSGGNSSPFPYNNLLWEVLNHSVPEFHVVDLSKVKAEKFFDLLGIMDHSNTAAMILTDSGPLHLSYATEKPVHAIATDSPSLWHGTAWRPFYASYTRYSNFPRDLTRILDLIRNPPAKPRHENIIHVYQRTPWATGEEKRRNEVAAKSWEGIGWVDCGLDDNCFVRTASEMVSEETKRIPMIKDMLRLACVGRDDSDVLILTNTDTCVATNLLQRIQGTLPAYAYRNDFTRLDSPIPDNEITKGNKYAGCDFFAMRVGWWRKNHELFPDMILGRHSWDRIFRELIKIAGGREIENLIYHERHPSGWEDPQNINRDPSNLRNCLLARQWLQERKMPLLEIETLNYEGKFKRPDFSKLKT |
Ga0209829_1000088920 | F038058 | AGAAG | MASHGVQYTVDHTERGIVSDHATPQPMQGMALKSNIPAIRAYKDARTARIKAVGEKSQSAFSVGGPANETTMGRGTPFNSDFL |
Ga0209829_100008898 | F091224 | GAG | MKSCIDHILKEIGLETPDIAPINKREAFEMGLIKGQEKPKKCEGCGKSAFTSASKCDAAIKHRLQQGFGGTGMLRAYECDIIKGNYHMSSVNNKKKL |
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