NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209829_10001244

Scaffold Ga0209829_10001244


Overview

Basic Information
Taxon OID3300027777 Open in IMG/M
Scaffold IDGa0209829_10001244 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21219
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (87.10%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015702Metagenome252Y
F034113Metagenome / Metatranscriptome175Y
F035651Metagenome171Y
F037608Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0209829_1000124410F034113AGGAGMALTPSWMTNAEGEEEYIDKGAVTTPQINPEVDAKYSAGKAQALATDKVEWPTKVNGLTY
Ga0209829_1000124418F035651GGAMSYYDGDAWTYHELNEIKCAECGDEFDQQDREGGNICPACIDKEGESK
Ga0209829_1000124423F015702AGGAGGMIKEIELEYTSYNLVKLARDKWGDNATEYLAGRLESVITYSQMKALIDSLKKEGK
Ga0209829_1000124424F037608GAGGMSNVIAFHPPKSELILLYEVVDASGKAEWGGNSEREALAWIASSPTATRILVSGWESDEEDAQIIGQPLDITTIVREASK
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