NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209829_10132845

Scaffold Ga0209829_10132845


Overview

Basic Information
Taxon OID3300027777 Open in IMG/M
Scaffold IDGa0209829_10132845 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1160
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016143Metagenome249Y
F017287Metagenome241Y
F093219Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209829_101328451F017287AGGAMDEYVRRIFEGEAPCDKCSQTEDCKEYEWACRAFSYYVLHGYFESYTIRQPTRHMFNKIFKEDDKALKNYMKSIRAKEQMGIVDLFEKEEIDEQ
Ga0209829_101328452F093219AGGAGGMNNEPVAWTACLDCGQRVTGDSIHTCSPQLKTLTDEEILEIANQCLVGATAWHNPDLEPIDFARAILRKAQYGH
Ga0209829_101328455F016143GGAGMNNEYIYTPVGTDITVRWKLAGWIPPSELPEYLTKWKHYQELPLRKLDDQARKEYELVMKKAKVMRVR
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