Basic Information | |
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Taxon OID | 3300027779 Open in IMG/M |
Scaffold ID | Ga0209709_10000643 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 32968 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (57.14%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 79 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F028309 | Metagenome | 192 | Y |
F078572 | Metagenome | 116 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209709_100006433 | F028309 | N/A | MLTPFTHDWRPGDRVVSIAVRESVAETGLGTIQRVLLDRAIILWDDGEQSEERLQDLIIAGFNPSKIVFSADSQFGHRNQKDWWTGSSVEVTEDITSEVAINERLIINQMMISGLPLSIDNMKGISWGSFINENFIQGS |
Ga0209709_100006434 | F078572 | N/A | MTERMRDAFVVQDLNGYKEMMPSQREKPMSMGDGTFMADNAFRESLPMMSYTPEELGINMAAYPMADESAVAIVSQDYQETGEMTSMTPAQQATVQRSSNPFLGVVQEDEYSGGVQFNADGNMVETHAYTILKSILFVGIGIWVGKNWF |
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