NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10004541

Scaffold Ga0209709_10004541


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10004541 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11143
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (62.86%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F001048Metagenome / Metatranscriptome793Y
F007052Metagenome / Metatranscriptome359Y
F011704Metagenome / Metatranscriptome288Y
F039176Metagenome164Y
F052633Metagenome / Metatranscriptome142Y
F072760Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1000454111F072760GAGMSMERHTLRAVKITKNIFELNRLNTELRHLKICVKVLENRKIELEDSF
Ga0209709_1000454112F001048AGAAGMKIVSTKQFWWRFNYLKRNGGEITVTDRTPEMDVKEFNRISSLVNKRVRWELGSEGFAKWDSCGVKDIPTLAKAYRIS
Ga0209709_1000454116F039176GAGLEIDLSLNRSLEELTSSYFEAHGAGVDIDNDSSEEERSDYYVLENYLSDLGAI
Ga0209709_1000454123F011704N/ALFGEHKEKFVQMNIENFQELIDISDYVDVVEEYLIRKFKDGGNYIIIDSYGDFLILDRDNVDNVFSTIWNDLYGSISEEIPYVLN
Ga0209709_100045415F052633N/AMKKKILERFAETLDICKVHWKEIFALSFLMHFFFDWFIFLAGFLVGKYF
Ga0209709_100045416F000615GAGMCRLRTFYECSDGEMGWAEIVLSYDEDIAAHIRHWGTGGRIVITEHVELIEGAL
Ga0209709_100045418F007052GAGMEKNETYFVARLINKGKFLSSEIFESLEEARLWAMAEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSERVS
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