NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10006005

Scaffold Ga0209709_10006005


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10006005 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9412
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F021858Metagenome / Metatranscriptome217Y
F029555Metagenome188Y
F039176Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1000600512F021858GGAMINVNNFENRIVKFKRISEGVETTKEAEVRQIDYDQKADIPRSVTARFVEPLNAVITLGYDKTVSKFRGPLGPDILESDFDITDFIKRSKLGGGDITIRSPKRNRPKF
Ga0209709_1000600517F029555AGGAGMSDFKGGYKTEVARYELIPAERVLFEKHIEIHDLVDLAERIERGEPHEVNPNYGGQGYTYLYPEVVDLGRVKVALINNKWKLDWENTRG
Ga0209709_100060054F000615GAGMCRLRCFYECSDGEMGWAEIVLSYDDDIAGHIRHMSTGGRMVIHEHIEMTV
Ga0209709_100060056F039176GAGMEEDYELDLSLNRSLEELIGSYFEAHGAGVDIDDDSSEKEKSDYYVLENYLSDMGAI
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