NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10010029

Scaffold Ga0209709_10010029


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10010029 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6857
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017933Metagenome / Metatranscriptome238Y
F037479Metagenome / Metatranscriptome168Y
F104046Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100100293F104046GAGGMWHYKQDLDKTVQWNTHTLSGGVPVFGLNTKQKFAPQRLDNVLDQGQYDTMNPNIFRGQRVTDGQLNFKQYGYEQKRNMFYQSYNAPRNNNAWENSINWAGL
Ga0209709_100100295F037479GGAGMRFSGMWNMGGTGTVSLVGSANENVPVFQENICSNEKMFFSGQIANLSRELIHVTFTGFGNALAFHKHDLRAYEAIQIFNMPISTVSVHVAATANPAAVVGIHGMGSLIEAEDEDEYSIILAKSHMSEQLPNSPVFNTDSYTRVNQAAAATFDLVTSVAAADFAVYKLTISTAAANVVDLFWTDSANGNINFIGQLNFASAGTFVYDFPDSMLRNPLRQAGKLRASCSTAAATVIDIIGHSVVGGQ
Ga0209709_100100296F017933AGGAGGMQEVIMGISIIGFSTMLSVMIFNSRKNDSLIRNLCDRIAKLEGQLEIHFMEKSK
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Institute for Fundamental Biomedical Research
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