NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10010884

Scaffold Ga0209709_10010884


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10010884 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6505
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019031Metagenome232Y
F027562Metagenome / Metatranscriptome194Y
F042026Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1001088411F027562N/AHYVPERQKLDMAIDFIKSLEDIGVEHDVLKGSAEYDPKLEEAVNTVFEKDEVDEDGYSED
Ga0209709_100108842F042026N/AMKKLIHFGCSFAMGNGVPEYIKGIESGARETSPMNRGNFKKKYGTKAEAPHTCGSLLASRLGTEFLKIADNGVSNEMIARKLLQTRLRKAFVLIGLTSYNRREALTTTRGNTHWQTWKMVDPKSPPYYKDLPFTPWIYRGETHYDPALEADGEIRTALQILYMQSFLKLNKVPYLMFNALHNGFDKPRTNECRGLLEKVDQKHFYKLQGSVNETQHGWCMKQGLSVSDIDEHPNVQGQREWADKLQPLVKDIWNVD
Ga0209709_100108847F019031N/AMMDFFKRLNKKYYHRDPVEHIIGRQIRTVTEYDDLYENQSRFDGLAWTKIKETYNLKCQFYEDIRDINLLKEVICLWFFRERADRDAGNDIKLSGKIITYSANTLFITPSKELRIKERKKFFPRRPCVQIDINNEMYLNIKKGLGINE
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